Collimonas sp. OK242

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. OK242 is a bacterial strain characterized by having a single replicon, which indicates a simpler genomic structure compared to some other bacterial species that may possess multiple replicons. The strain is cataloged under the accession number FNOR00000000.1, which provides a reference point for researchers interested in accessing its genomic data. As a member of the genus Collimonas, this strain is likely involved in saprophytic processes, which involve the decomposition of organic matter. Members of the Collimonas genus are known for their ability to thrive in soil environments, often engaging in interactions with fungi and playing a role in nutrient cycling. The simplicity of having one replicon may confer advantages in terms of replication efficiency and stability under certain environmental conditions. This trait may allow Collimonas sp. OK242 to adapt rapidly to changes in its habitat, facilitating its ecological role in the breakdown of organic materials. In summary, Collimonas sp. OK242, with its single replicon, is positioned within a broader ecological context as a decomposer in soil ecosystems. Its characteristics potentially contribute to the maintenance of soil health and fertility by participating in nutrient cycling and organic matter decomposition. Further studies on this strain could enhance our understanding of its specific interactions within the soil microbiome.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. OK242
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. OK242 genome assembly, contig: Ga0070537_156, whole

Gene Summary

Adenine Count

1072391 bp

Thymine Count

1065792 bp

Guanine Count

1409540 bp

Cytosine Count

1429377 bp

Genome Length

4978279 bp

Protein-coding Genes

4609 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phytanoyl-coa hydroxylaseSAMN04515617_109171Not AvailablePositive2585103 - 258588228547.7
uncharacterized iron-regulated membrane proteinSAMN04515617_109172Not AvailableNegative2585868 - 258703142037.9
monovalent cation:h+ antiporter-2, cpa2 familySAMN04515617_109173Not AvailableNegative2587115 - 258913972931.7
arabinose-5-phosphate isomeraseSAMN04515617_109174Not AvailablePositive2589274 - 259030536287.0
3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (kdo 8-p phosphatase)SAMN04515617_109175Not AvailablePositive2590305 - 259088920296.3
lipopolysaccharide export system protein lptcSAMN04515617_109176Not AvailablePositive2590886 - 259147922443.0
lipopolysaccharide export system protein lptaSAMN04515617_109177Not AvailablePositive2591560 - 259211420140.8
lipopolysaccharide export system atp-binding proteinSAMN04515617_109178Not AvailablePositive2592111 - 259285727307.2
rna polymerase, sigma 54 subunit, rpon/siglSAMN04515617_109179Not AvailablePositive2592968 - 259445855246.0
ssu ribosomal protein s30pSAMN04515617_109180Not AvailablePositive2594626 - 259497613457.2

Displaying genes 2401 – 2410 of 4667 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.