Paenibacillus sp. PDC88

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. PDC88 is a member of the Paenibacillus genus, characterized by having a single replicon. This trait indicates a streamlined genomic structure, which may contribute to its adaptability and efficiency in various environments. The genome of Paenibacillus sp. PDC88 is cataloged under the accession number FNNT00000000.1, which serves as a reference for further studies and analyses. Paenibacillus species are known for their diverse metabolic capabilities and roles in soil ecosystems. They can participate in nitrogen fixation, organic matter decomposition, and interactions with plant roots, potentially enhancing soil fertility and plant growth. The ecological significance of Paenibacillus sp. PDC88 may lie in its ability to contribute to nutrient cycling and improve soil health. In summary, the unique genomic characteristic of having a single replicon and the established taxonomy within the Paenibacillus genus highlight the potential importance of Paenibacillus sp. PDC88 in ecological processes. Its role in soil ecosystems could be pivotal in promoting plant health and maintaining environmental balance. Further studies are necessary to fully understand its specific functions and applications in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. PDC88
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. PDC88 genome assembly, contig: Ga0115487_135,

Gene Summary

Adenine Count

1641785 bp

Thymine Count

1646321 bp

Guanine Count

1358012 bp

Cytosine Count

1382562 bp

Genome Length

6028771 bp

Protein-coding Genes

5512 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05518848_104117Not AvailableNegative2898109 - 289913738545.2
dna-binding transcriptional regulator, padr familySAMN05518848_104118Not AvailableNegative2899151 - 289948612762.3
uncharacterized membrane-anchored protein yitt, contains duf161 and duf2179 domainsSAMN05518848_104119Not AvailableNegative2899713 - 290054930806.3
peptidoglycan-n-acetylmuramate o-acetyltransferaseSAMN05518848_104120Not AvailableNegative2900798 - 290280173584.7
dna-binding transcriptional regulator, lysr familySAMN05518848_104121Not AvailableNegative2903047 - 290393733869.4
4-hydroxy-tetrahydrodipicolinate synthaseSAMN05518848_104122Not AvailablePositive2904050 - 290492831812.5
adenylosuccinate synthetaseSAMN05518848_104123Not AvailableNegative2904999 - 290628246582.7
dna-binding transcriptional regulator, lysr familySAMN05518848_104124Not AvailablePositive2906390 - 290728333296.4
oxidoreductase molybdopterin binding domain-containing proteinSAMN05518848_104125Not AvailablePositive2907419 - 290865146491.8
rna polymerase, alpha chain c terminal domainSAMN05518848_104126Not AvailableNegative2908695 - 290898810811.9

Displaying genes 2881 – 2890 of 5794 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.