Paenibacillus sp. PDC88

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. PDC88 is a member of the Paenibacillus genus, characterized by having a single replicon. This trait indicates a streamlined genomic structure, which may contribute to its adaptability and efficiency in various environments. The genome of Paenibacillus sp. PDC88 is cataloged under the accession number FNNT00000000.1, which serves as a reference for further studies and analyses. Paenibacillus species are known for their diverse metabolic capabilities and roles in soil ecosystems. They can participate in nitrogen fixation, organic matter decomposition, and interactions with plant roots, potentially enhancing soil fertility and plant growth. The ecological significance of Paenibacillus sp. PDC88 may lie in its ability to contribute to nutrient cycling and improve soil health. In summary, the unique genomic characteristic of having a single replicon and the established taxonomy within the Paenibacillus genus highlight the potential importance of Paenibacillus sp. PDC88 in ecological processes. Its role in soil ecosystems could be pivotal in promoting plant health and maintaining environmental balance. Further studies are necessary to fully understand its specific functions and applications in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. PDC88
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. PDC88 genome assembly, contig: Ga0115487_135,

Gene Summary

Adenine Count

1641785 bp

Thymine Count

1646321 bp

Guanine Count

1358012 bp

Cytosine Count

1382562 bp

Genome Length

6028771 bp

Protein-coding Genes

5512 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
stage ii sporulation protein dSAMN05518848_10415Not AvailablePositive2784285 - 278640274547.4
s-adenosylmethionine--trna ribosyltransferase-isomeraseSAMN05518848_10416Not AvailablePositive2786410 - 278743838461.2
queuine trna-ribosyltransferaseSAMN05518848_10417Not AvailablePositive2787461 - 278860043162.9
preprotein translocase subunit yajcSAMN05518848_10418Not AvailablePositive2788672 - 278898011280.0
putative membrane protein, tigr04086 familySAMN05518848_10419Not AvailableNegative2789088 - 278947714282.8
uncharacterized membrane protein ycap, duf421 familySAMN05518848_10420Not AvailablePositive2789644 - 279040529111.9
stage v sporulation protein bSAMN05518848_10421Not AvailableNegative2790424 - 279200757199.2
post-transcriptional regulatorSAMN05518848_10422Not AvailablePositive2792231 - 27924919843.69
secd/secf fusion proteinSAMN05518848_10423Not AvailablePositive2792599 - 279387346404.7
protein translocase subunit secfSAMN05518848_10424Not AvailablePositive2793863 - 279477433780.9

Displaying genes 2781 – 2790 of 5794 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.