Paenibacillus sp. PDC88

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. PDC88 is a member of the Paenibacillus genus, characterized by having a single replicon. This trait indicates a streamlined genomic structure, which may contribute to its adaptability and efficiency in various environments. The genome of Paenibacillus sp. PDC88 is cataloged under the accession number FNNT00000000.1, which serves as a reference for further studies and analyses. Paenibacillus species are known for their diverse metabolic capabilities and roles in soil ecosystems. They can participate in nitrogen fixation, organic matter decomposition, and interactions with plant roots, potentially enhancing soil fertility and plant growth. The ecological significance of Paenibacillus sp. PDC88 may lie in its ability to contribute to nutrient cycling and improve soil health. In summary, the unique genomic characteristic of having a single replicon and the established taxonomy within the Paenibacillus genus highlight the potential importance of Paenibacillus sp. PDC88 in ecological processes. Its role in soil ecosystems could be pivotal in promoting plant health and maintaining environmental balance. Further studies are necessary to fully understand its specific functions and applications in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. PDC88
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. PDC88 genome assembly, contig: Ga0115487_135,

Gene Summary

Adenine Count

1641785 bp

Thymine Count

1646321 bp

Guanine Count

1358012 bp

Cytosine Count

1382562 bp

Genome Length

6028771 bp

Protein-coding Genes

5512 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diguanylate cyclase (ggdef) domain-containing proteinSAMN05518848_103395Not AvailableNegative2627678 - 262924058233.6
probable oxidoreductase, llm familySAMN05518848_103396Not AvailableNegative2629510 - 263056538104.5
uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 familySAMN05518848_103397Not AvailableNegative2630681 - 263134925786.8
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05518848_103398Not AvailableNegative2631556 - 263231126314.5
beta-xylosidaseSAMN05518848_103399Not AvailableNegative2632594 - 2636988158801.0
dna-binding transcriptional regulator lsrr, deor familySAMN05518848_103400Not AvailableNegative2637210 - 263831941606.3
ribonuclease bn, trna processing enzymeSAMN05518848_103401Not AvailablePositive2638412 - 263914626264.5
hypothetical proteinSAMN05518848_103402Not AvailablePositive2639174 - 264007333187.7
iron(iii) transport system substrate-binding proteinSAMN05518848_103403Not AvailablePositive2640070 - 264111636930.0
iron(iii) transport system permease proteinSAMN05518848_103404Not AvailablePositive2641135 - 264288664159.2

Displaying genes 2631 – 2640 of 5794 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.