Paenibacillus sp. PDC88

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. PDC88 is a member of the Paenibacillus genus, characterized by having a single replicon. This trait indicates a streamlined genomic structure, which may contribute to its adaptability and efficiency in various environments. The genome of Paenibacillus sp. PDC88 is cataloged under the accession number FNNT00000000.1, which serves as a reference for further studies and analyses. Paenibacillus species are known for their diverse metabolic capabilities and roles in soil ecosystems. They can participate in nitrogen fixation, organic matter decomposition, and interactions with plant roots, potentially enhancing soil fertility and plant growth. The ecological significance of Paenibacillus sp. PDC88 may lie in its ability to contribute to nutrient cycling and improve soil health. In summary, the unique genomic characteristic of having a single replicon and the established taxonomy within the Paenibacillus genus highlight the potential importance of Paenibacillus sp. PDC88 in ecological processes. Its role in soil ecosystems could be pivotal in promoting plant health and maintaining environmental balance. Further studies are necessary to fully understand its specific functions and applications in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. PDC88
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. PDC88 genome assembly, contig: Ga0115487_135,

Gene Summary

Adenine Count

1641785 bp

Thymine Count

1646321 bp

Guanine Count

1358012 bp

Cytosine Count

1382562 bp

Genome Length

6028771 bp

Protein-coding Genes

5512 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
purine-nucleoside phosphorylaseSAMN05518848_10275Not AvailablePositive1373995 - 137482229524.2
purine-nucleoside phosphorylaseSAMN05518848_10276Not AvailablePositive1374847 - 137570430709.2
pyrimidine-nucleoside phosphorylaseSAMN05518848_10277Not AvailablePositive1375754 - 137708846894.5
cobalt-zinc-cadmium efflux system proteinSAMN05518848_10278Not AvailableNegative1377207 - 137821436723.6
d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5/6)SAMN05518848_10279Not AvailablePositive1378602 - 137978943378.3
anti-anti-sigma regulatory factor, spoiiaaSAMN05518848_10280Not AvailablePositive1379903 - 138025612932.9
stage ii sporulation protein ab (anti-sigma f factor)SAMN05518848_10281Not AvailablePositive1380253 - 138070816651.9
rna polymerase, sigma subunit, rpox/sigfSAMN05518848_10282Not AvailablePositive1380720 - 138147528836.5
stage v sporulation protein aaSAMN05518848_10283Not AvailablePositive1381642 - 138228624512.0
stage v sporulation protein abSAMN05518848_10284Not AvailablePositive1382286 - 138271115088.3

Displaying genes 1501 – 1510 of 5794 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.