Paenibacillus sp. PDC88

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. PDC88 is a member of the Paenibacillus genus, characterized by having a single replicon. This trait indicates a streamlined genomic structure, which may contribute to its adaptability and efficiency in various environments. The genome of Paenibacillus sp. PDC88 is cataloged under the accession number FNNT00000000.1, which serves as a reference for further studies and analyses. Paenibacillus species are known for their diverse metabolic capabilities and roles in soil ecosystems. They can participate in nitrogen fixation, organic matter decomposition, and interactions with plant roots, potentially enhancing soil fertility and plant growth. The ecological significance of Paenibacillus sp. PDC88 may lie in its ability to contribute to nutrient cycling and improve soil health. In summary, the unique genomic characteristic of having a single replicon and the established taxonomy within the Paenibacillus genus highlight the potential importance of Paenibacillus sp. PDC88 in ecological processes. Its role in soil ecosystems could be pivotal in promoting plant health and maintaining environmental balance. Further studies are necessary to fully understand its specific functions and applications in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. PDC88
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. PDC88 genome assembly, contig: Ga0115487_135,

Gene Summary

Adenine Count

1641785 bp

Thymine Count

1646321 bp

Guanine Count

1358012 bp

Cytosine Count

1382562 bp

Genome Length

6028771 bp

Protein-coding Genes

5512 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05518848_1011216Not AvailableNegative1220842 - 12210036026.82
acetyltransferase (gnat) family proteinSAMN05518848_1011217Not AvailableNegative1221206 - 122161015981.2
nudix domain-containing proteinSAMN05518848_1011218Not AvailableNegative1221798 - 122232820098.1
peptidase_g2, imc autoproteolytic cleavage domainSAMN05518848_1011219Not AvailableNegative1222564 - 122407251530.9
hypothetical proteinSAMN05518848_1011220Not AvailablePositive1224371 - 122504225006.6
radical sam superfamily enzyme ygiq, upf0313 familySAMN05518848_1011221Not AvailableNegative1225387 - 122715668254.2
atp-dependent dna helicase recqSAMN05518848_1011222Not AvailableNegative1227202 - 122908270642.4
d-methionine transport system substrate-binding proteinSAMN05518848_1011223Not AvailableNegative1229370 - 123021231309.0
23s rrna pseudouridine1911/1915/1917 synthaseSAMN05518848_1011224Not AvailablePositive1230421 - 123145538232.6
s-adenosylmethionine decarboxylaseSAMN05518848_1011225Not AvailablePositive1231627 - 123249933448.1

Displaying genes 1351 – 1360 of 5794 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.