Paenibacillus sp. PDC88

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. PDC88 is a member of the Paenibacillus genus, characterized by having a single replicon. This trait indicates a streamlined genomic structure, which may contribute to its adaptability and efficiency in various environments. The genome of Paenibacillus sp. PDC88 is cataloged under the accession number FNNT00000000.1, which serves as a reference for further studies and analyses. Paenibacillus species are known for their diverse metabolic capabilities and roles in soil ecosystems. They can participate in nitrogen fixation, organic matter decomposition, and interactions with plant roots, potentially enhancing soil fertility and plant growth. The ecological significance of Paenibacillus sp. PDC88 may lie in its ability to contribute to nutrient cycling and improve soil health. In summary, the unique genomic characteristic of having a single replicon and the established taxonomy within the Paenibacillus genus highlight the potential importance of Paenibacillus sp. PDC88 in ecological processes. Its role in soil ecosystems could be pivotal in promoting plant health and maintaining environmental balance. Further studies are necessary to fully understand its specific functions and applications in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. PDC88
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. PDC88 genome assembly, contig: Ga0115487_135,

Gene Summary

Adenine Count

1641785 bp

Thymine Count

1646321 bp

Guanine Count

1358012 bp

Cytosine Count

1382562 bp

Genome Length

6028771 bp

Protein-coding Genes

5512 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphatidylglycerophosphatase aSAMN05518848_101825Not AvailableNegative857467 - 85802720504.7
dna polymerase-3 subunit alphaSAMN05518848_101826Not AvailableNegative858163 - 861765135225.0
sporulation protein ytrhSAMN05518848_101827Not AvailablePositive861938 - 86226111474.6
hypothetical proteinSAMN05518848_101828Not AvailablePositive862281 - 86276318811.0
ytpi-like proteinSAMN05518848_101829Not AvailablePositive862834 - 86314511563.7
predicted transcriptional regulator containing cbs domainsSAMN05518848_101830Not AvailableNegative863177 - 86451449250.0
hypothetical proteinSAMN05518848_101831Not AvailableNegative864773 - 86509612306.2
cell fate regulator ylbf, yhea/ymca/duf963 family (controls sporulation, competence, biofilm development)SAMN05518848_101832Not AvailableNegative865197 - 86554413390.2
yhec/d like atp-graspSAMN05518848_101833Not AvailablePositive865777 - 86714450774.9
yhec/d like atp-graspSAMN05518848_101834Not AvailablePositive867170 - 86827041470.1

Displaying genes 1001 – 1010 of 5794 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.