Hydrobacter penzbergensis strain DSM 25353

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Hydrobacter

Description

Hydrobacter penzbergensis strain DSM 25353 is characterized by having a single replicon. This trait is significant as it indicates a streamlined genomic structure, which can impact the organism's adaptability and replication efficiency. The strain is cataloged under the accession number FNNO00000000.1, allowing for easier reference and further research within microbial databases. As a member of the genus Hydrobacter, this strain contributes to our understanding of microbial diversity in various ecological niches. Although specific metabolic capabilities and ecological roles of Hydrobacter penzbergensis are not detailed in the available data, members of the Hydrobacter genus are generally known for their potential applications in environmental biotechnology, particularly in bioremediation processes. The presence of a single replicon may also suggest that Hydrobacter penzbergensis strain DSM 25353 can maintain a stable genome, which could be advantageous for survival in fluctuating environments. This genomic stability could facilitate the organism's role in nutrient cycling or other ecological functions, although specific interactions or contributions to its ecosystem are not documented in the provided evidence. In conclusion, while further investigation is necessary to fully elucidate the ecological implications of Hydrobacter penzbergensis strain DSM 25353, its single replicon structure may play a crucial role in its adaptability and potential environmental applications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusHydrobacter
SpeciesHydrobacter penzbergensis
Strainstrain DSM 25353

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrobacter penzbergensis strain DSM 25353 genome assembly,

Gene Summary

Adenine Count

1076546 bp

Thymine Count

1096056 bp

Guanine Count

883842 bp

Cytosine Count

905065 bp

Genome Length

3961509 bp

Protein-coding Genes

3503 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunitSAMN05444410_1206Not AvailableNegative3625211 - 362556113307.9
gtp-binding protein hflxSAMN05444410_1207Not AvailableNegative3625567 - 362675445817.2
outer membrane protein beta-barrel domain-containing proteinSAMN05444410_1208Not AvailableNegative3626788 - 362752226966.7
alkyl hydroperoxide reductase subunit dSAMN05444410_1209Not AvailableNegative3627664 - 362826021777.2
peroxiredoxin (alkyl hydroperoxide reductase subunit c)SAMN05444410_12010Not AvailableNegative3628271 - 362884021599.6
peroxiredoxinSAMN05444410_12011Not AvailableNegative3628996 - 363045655290.6
23s rrna m(5)u-1939 methyltransferaseSAMN05444410_12012Not AvailablePositive3630554 - 363194251784.9
rhomboid family proteinSAMN05444410_12013Not AvailablePositive3631939 - 363278731936.0
membrane associated serine protease, rhomboid familySAMN05444410_12014Not AvailablePositive3632806 - 363372334330.1
metal-dependent hydrolase, endonuclease/exonuclease/phosphatase familySAMN05444410_12015Not AvailablePositive3633754 - 363486942598.0

Displaying genes 3231 – 3240 of 3546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.