Pedobacter ruber strain DSM 24536

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Daejeonella

Description

Pedobacter ruber strain DSM 24536 is a Gram-negative, non-motile, rod-shaped bacterium. This strain is classified as aerobic, requiring oxygen for its metabolic processes. It is psychrotolerant, with an optimal growth temperature of 16°C, indicating its ability to thrive in cooler environments. The temperature range suitable for its growth is consistent with psychrotolerant characteristics, allowing it to survive and function well in cold conditions. Pedobacter ruber strain DSM 24536 has a single replicon and is categorized as non-spore-forming, which suggests that it does not produce spores as a means of survival under adverse conditions. The strain is associated with the accession number FNHH00000000.1, which provides a reference point for its genomic data. The physiological traits of Pedobacter ruber strain DSM 24536 suggest that it plays a role in the decomposition of organic matter in cold environments, potentially contributing to nutrient cycling in these ecosystems. Its ability to thrive at low temperatures makes it particularly relevant in polar or high-altitude habitats, where it may influence microbial community dynamics and ecosystem functions. The presence of this strain in such environments underscores the adaptability of microbial life to extreme conditions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusDaejeonella
SpeciesDaejeonella rubra
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter ruber strain DSM 24536 genome assembly, contig:

Gene Summary

Adenine Count

1308496 bp

Thymine Count

1307397 bp

Guanine Count

834775 bp

Cytosine Count

828617 bp

Genome Length

4279285 bp

Protein-coding Genes

3702 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05421813_10167Not AvailableNegative76875 - 770426291.83
cytochrome c oxidase cbb3-type subunit i/iiSAMN05421813_10168Not AvailableNegative77076 - 7921180829.5
cytochrome oxidase maturation protein, cbb3-typeSAMN05421813_10169Not AvailableNegative79298 - 794596191.55
cu+-exporting atpaseSAMN05421813_10170Not AvailableNegative79456 - 8185589884.4
ca2+-transporting atpaseSAMN05421813_10171Not AvailableNegative81943 - 8444192741.0
nucleotide-binding universal stress protein, uspa familySAMN05421813_10172Not AvailablePositive84683 - 8551631225.8
quinoprotein glucose dehydrogenaseSAMN05421813_10173Not AvailablePositive85655 - 8775476368.0
uncharacterized membrane protein yoak, upf0700 familySAMN05421813_10174Not AvailableNegative87828 - 8855927477.3
regulator of nucleoside diphosphate kinaseSAMN05421813_10175Not AvailablePositive89015 - 8940714614.0
uncharacterized membrane protein, duf4010 familySAMN05421813_10176Not AvailablePositive89532 - 9082446769.7

Displaying genes 71 – 80 of 3744 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.