Pedobacter ruber strain DSM 24536

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Daejeonella

Description

Pedobacter ruber strain DSM 24536 is a Gram-negative, non-motile, rod-shaped bacterium. This strain is classified as aerobic, requiring oxygen for its metabolic processes. It is psychrotolerant, with an optimal growth temperature of 16°C, indicating its ability to thrive in cooler environments. The temperature range suitable for its growth is consistent with psychrotolerant characteristics, allowing it to survive and function well in cold conditions. Pedobacter ruber strain DSM 24536 has a single replicon and is categorized as non-spore-forming, which suggests that it does not produce spores as a means of survival under adverse conditions. The strain is associated with the accession number FNHH00000000.1, which provides a reference point for its genomic data. The physiological traits of Pedobacter ruber strain DSM 24536 suggest that it plays a role in the decomposition of organic matter in cold environments, potentially contributing to nutrient cycling in these ecosystems. Its ability to thrive at low temperatures makes it particularly relevant in polar or high-altitude habitats, where it may influence microbial community dynamics and ecosystem functions. The presence of this strain in such environments underscores the adaptability of microbial life to extreme conditions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusDaejeonella
SpeciesDaejeonella rubra
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter ruber strain DSM 24536 genome assembly, contig:

Gene Summary

Adenine Count

1308496 bp

Thymine Count

1307397 bp

Guanine Count

834775 bp

Cytosine Count

828617 bp

Genome Length

4279285 bp

Protein-coding Genes

3702 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
homoserine kinaseSAMN05421813_103149Not AvailableNegative769351 - 77028633940.3
aspartate kinaseSAMN05421813_103150Not AvailableNegative770358 - 77281490594.7
ribosome biogenesis gtpaseSAMN05421813_103151Not AvailablePositive773134 - 77405434351.2
d-tyrosyl-trna(tyr) deacylaseSAMN05421813_103152Not AvailablePositive774051 - 77450316380.8
ntp pyrophosphatase, house-cleaning of non-canonical ntpsSAMN05421813_103153Not AvailablePositive774519 - 77484512341.6
2-phosphosulfolactate phosphataseSAMN05421813_103154Not AvailableNegative774883 - 77559626193.5
aminomethyltransferaseSAMN05421813_103155Not AvailableNegative775617 - 77669339477.2
rnase hiiSAMN05421813_103156Not AvailableNegative776776 - 77737522650.3
sigma-b regulation protein rsbu (phosphoserine phosphatase)SAMN05421813_103157Not AvailableNegative777428 - 77867246289.7
glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-n-acetylglucosamine synthaseSAMN05421813_103158Not AvailableNegative778882 - 78001542544.2

Displaying genes 701 – 710 of 3744 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.