Pedobacter ruber strain DSM 24536

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Daejeonella

Description

Pedobacter ruber strain DSM 24536 is a Gram-negative, non-motile, rod-shaped bacterium. This strain is classified as aerobic, requiring oxygen for its metabolic processes. It is psychrotolerant, with an optimal growth temperature of 16°C, indicating its ability to thrive in cooler environments. The temperature range suitable for its growth is consistent with psychrotolerant characteristics, allowing it to survive and function well in cold conditions. Pedobacter ruber strain DSM 24536 has a single replicon and is categorized as non-spore-forming, which suggests that it does not produce spores as a means of survival under adverse conditions. The strain is associated with the accession number FNHH00000000.1, which provides a reference point for its genomic data. The physiological traits of Pedobacter ruber strain DSM 24536 suggest that it plays a role in the decomposition of organic matter in cold environments, potentially contributing to nutrient cycling in these ecosystems. Its ability to thrive at low temperatures makes it particularly relevant in polar or high-altitude habitats, where it may influence microbial community dynamics and ecosystem functions. The presence of this strain in such environments underscores the adaptability of microbial life to extreme conditions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusDaejeonella
SpeciesDaejeonella rubra
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter ruber strain DSM 24536 genome assembly, contig:

Gene Summary

Adenine Count

1308496 bp

Thymine Count

1307397 bp

Guanine Count

834775 bp

Cytosine Count

828617 bp

Genome Length

4279285 bp

Protein-coding Genes

3702 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-lactate dehydrogenase complex protein lldgSAMN05421813_13411Not AvailablePositive3852549 - 385313320936.0
malate synthaseSAMN05421813_13412Not AvailablePositive3853244 - 385513070714.2
beta-lactamase class aSAMN05421813_13413Not AvailablePositive3855276 - 385617232284.7
carboxypepd_reg-like domain-containing proteinSAMN05421813_13414Not AvailableNegative3856216 - 385884399315.0
mannose or cellobiose epimerase, n-acyl-d-glucosamine 2-epimerase familySAMN05421813_13415Not AvailablePositive3859244 - 386057251068.7
mannose or cellobiose epimerase, n-acyl-d-glucosamine 2-epimerase familySAMN05421813_13416Not AvailablePositive3860617 - 386196050965.4
predicted oxidoreductaseSAMN05421813_13417Not AvailablePositive3862058 - 386311038735.3
pectate lyase, pela/pel-15e familySAMN05421813_13418Not AvailablePositive3863121 - 386468959249.9
cytochrome c oxidase, cbb3-type, subunit iiiSAMN05421813_13419Not AvailablePositive3864725 - 386652165623.9
reactive intermediate/imine deaminaseSAMN05421813_13420Not AvailablePositive3866593 - 386705717109.9

Displaying genes 3381 – 3390 of 3744 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.