Pedobacter ruber strain DSM 24536

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Daejeonella

Description

Pedobacter ruber strain DSM 24536 is a Gram-negative, non-motile, rod-shaped bacterium. This strain is classified as aerobic, requiring oxygen for its metabolic processes. It is psychrotolerant, with an optimal growth temperature of 16°C, indicating its ability to thrive in cooler environments. The temperature range suitable for its growth is consistent with psychrotolerant characteristics, allowing it to survive and function well in cold conditions. Pedobacter ruber strain DSM 24536 has a single replicon and is categorized as non-spore-forming, which suggests that it does not produce spores as a means of survival under adverse conditions. The strain is associated with the accession number FNHH00000000.1, which provides a reference point for its genomic data. The physiological traits of Pedobacter ruber strain DSM 24536 suggest that it plays a role in the decomposition of organic matter in cold environments, potentially contributing to nutrient cycling in these ecosystems. Its ability to thrive at low temperatures makes it particularly relevant in polar or high-altitude habitats, where it may influence microbial community dynamics and ecosystem functions. The presence of this strain in such environments underscores the adaptability of microbial life to extreme conditions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusDaejeonella
SpeciesDaejeonella rubra
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter ruber strain DSM 24536 genome assembly, contig:

Gene Summary

Adenine Count

1308496 bp

Thymine Count

1307397 bp

Guanine Count

834775 bp

Cytosine Count

828617 bp

Genome Length

4279285 bp

Protein-coding Genes

3702 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integral membrane proteinSAMN05421813_101157Not AvailablePositive175517 - 17581611669.8
carboxypepd_reg-like domain-containing proteinSAMN05421813_101158Not AvailableNegative175864 - 17715049119.0
hypothetical proteinSAMN05421813_101159Not AvailablePositive177377 - 1774723654.51
cytochrome c oxidase assembly protein subunit 15SAMN05421813_101160Not AvailablePositive177697 - 17874040140.7
hypothetical proteinSAMN05421813_101161Not AvailableNegative178790 - 1789757325.08
cytochrome cSAMN05421813_101162Not AvailablePositive179075 - 17947315108.5
uncharacterized membrane-anchored protein yitt, contains duf161 and duf2179 domainsSAMN05421813_101163Not AvailableNegative179768 - 18065532496.8
anthranilate phosphoribosyltransferaseSAMN05421813_101164Not AvailablePositive180933 - 18191936139.3
phosphoribosylanthranilate isomeraseSAMN05421813_101165Not AvailablePositive181916 - 18256024301.5
tryptophan synthase beta chainSAMN05421813_101166Not AvailablePositive182591 - 18379944286.2

Displaying genes 161 – 170 of 3744 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.