Pedobacter ruber strain DSM 24536

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Daejeonella

Description

Pedobacter ruber strain DSM 24536 is a Gram-negative, non-motile, rod-shaped bacterium. This strain is classified as aerobic, requiring oxygen for its metabolic processes. It is psychrotolerant, with an optimal growth temperature of 16°C, indicating its ability to thrive in cooler environments. The temperature range suitable for its growth is consistent with psychrotolerant characteristics, allowing it to survive and function well in cold conditions. Pedobacter ruber strain DSM 24536 has a single replicon and is categorized as non-spore-forming, which suggests that it does not produce spores as a means of survival under adverse conditions. The strain is associated with the accession number FNHH00000000.1, which provides a reference point for its genomic data. The physiological traits of Pedobacter ruber strain DSM 24536 suggest that it plays a role in the decomposition of organic matter in cold environments, potentially contributing to nutrient cycling in these ecosystems. Its ability to thrive at low temperatures makes it particularly relevant in polar or high-altitude habitats, where it may influence microbial community dynamics and ecosystem functions. The presence of this strain in such environments underscores the adaptability of microbial life to extreme conditions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusDaejeonella
SpeciesDaejeonella rubra
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter ruber strain DSM 24536 genome assembly, contig:

Gene Summary

Adenine Count

1308496 bp

Thymine Count

1307397 bp

Guanine Count

834775 bp

Cytosine Count

828617 bp

Genome Length

4279285 bp

Protein-coding Genes

3702 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-aminopeptidaseSAMN05421813_10197Not AvailablePositive113755 - 11488539541.8
d-alanine transaminase/branched-chain amino acid aminotransferaseSAMN05421813_10198Not AvailablePositive114887 - 11571431119.3
yhch/yjgk/yial family proteinSAMN05421813_10199Not AvailableNegative115792 - 11624116974.3
2-dehydro-3-deoxygluconokinaseSAMN05421813_101100Not AvailableNegative116311 - 11733637044.5
2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolaseSAMN05421813_101101Not AvailablePositive117562 - 11822424000.5
gliding motility-associated c-terminal domain-containing proteinSAMN05421813_101102Not AvailablePositive118353 - 121193103491.0
type ix secretion system membrane protein, porp/sprf familySAMN05421813_101103Not AvailablePositive121320 - 12233637012.8
rna polymerase sigma-54 factorSAMN05421813_101104Not AvailableNegative122603 - 12407256695.2
hypothetical proteinSAMN05421813_101105Not AvailablePositive124135 - 1242333913.03
large conductance mechanosensitive channelSAMN05421813_101106Not AvailablePositive124220 - 12463314760.4

Displaying genes 101 – 110 of 3744 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.