Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN04488090_0984 | Not Available | Positive | 1305755 - 1306366 | 22715.3 |
| peptidase family m23 | SAMN04488090_0985 | Not Available | Positive | 1306408 - 1308249 | 67988.4 |
| peroxiredoxin q/bcp | SAMN04488090_0986 | Not Available | Positive | 1308323 - 1308772 | 16928.3 |
| transketolase | SAMN04488090_0987 | Not Available | Positive | 1308809 - 1309657 | 30706.7 |
| transketolase | SAMN04488090_0988 | Not Available | Positive | 1309681 - 1310640 | 34282.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_0989 | Not Available | Positive | 1310670 - 1311305 | 24657.2 |
| hypothetical protein | SAMN04488090_0990 | Not Available | Positive | 1311404 - 1311850 | 17130.3 |
| hypothetical protein | SAMN04488090_0991 | Not Available | Positive | 1311894 - 1312340 | 17688.2 |
| predicted membrane protein | SAMN04488090_0992 | Not Available | Positive | 1312468 - 1313130 | 25298.5 |
| hypothetical protein | SAMN04488090_0993 | Not Available | Positive | 1313144 - 1313953 | 29486.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
