Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488090_0954 | Not Available | Positive | 1271338 - 1272123 | 29306.8 |
| signal transduction histidine kinase | SAMN04488090_0955 | Not Available | Negative | 1272168 - 1273649 | 54183.3 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488090_0956 | Not Available | Negative | 1273651 - 1274355 | 26249.6 |
| yhs domain-containing protein | SAMN04488090_0957 | Not Available | Positive | 1274521 - 1274988 | 17960.3 |
| hypothetical protein | SAMN04488090_0958 | Not Available | Positive | 1275002 - 1275442 | 16374.2 |
| doxx-like family protein | SAMN04488090_0959 | Not Available | Positive | 1275442 - 1275837 | 14607.4 |
| hypothetical protein | SAMN04488090_0960 | Not Available | Positive | 1275879 - 1276385 | 18819.5 |
| transport and golgi organisation 2 | SAMN04488090_0961 | Not Available | Positive | 1276373 - 1278127 | 66469.8 |
| hypothetical protein | SAMN04488090_0962 | Not Available | Positive | 1278154 - 1279080 | 33615.4 |
| rna methyltransferase, trmh family | SAMN04488090_0963 | Not Available | Negative | 1279192 - 1279932 | 27297.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
