Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate synthase (nadh) large subunit | SAMN04488090_0944 | Not Available | Positive | 1253254 - 1257858 | 169784.0 |
| glutamate synthase (nadh) small subunit | SAMN04488090_0945 | Not Available | Positive | 1257946 - 1259475 | 55963.4 |
| hypothetical protein | SAMN04488090_0946 | Not Available | Positive | 1259757 - 1261280 | 52997.2 |
| hypothetical protein | SAMN04488090_0947 | Not Available | Positive | 1261388 - 1262809 | 49765.5 |
| hypothetical protein | SAMN04488090_0948 | Not Available | Positive | 1262947 - 1264881 | 67905.2 |
| major facilitator superfamily protein | SAMN04488090_0949 | Not Available | Negative | 1264966 - 1266540 | 58791.7 |
| membrane fusion protein, multidrug efflux system | SAMN04488090_0950 | Not Available | Negative | 1266548 - 1267603 | 39133.6 |
| outer membrane protein tolc | SAMN04488090_0951 | Not Available | Negative | 1267600 - 1268901 | 49968.7 |
| transcriptional regulator, arac family | SAMN04488090_0952 | Not Available | Positive | 1269020 - 1269868 | 32628.0 |
| alanine-synthesizing transaminase | SAMN04488090_0953 | Not Available | Positive | 1269991 - 1271241 | 46292.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
