Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase | SAMN04488090_0903 | Not Available | Negative | 1206383 - 1207120 | 27922.7 |
| phytanoyl-coa dioxygenase (phyh) | SAMN04488090_0904 | Not Available | Negative | 1207224 - 1208030 | 31036.9 |
| topoisomerase-4 subunit b | SAMN04488090_0905 | Not Available | Negative | 1208376 - 1210274 | 71460.3 |
| capsule biosynthesis gfcc | SAMN04488090_0906 | Not Available | Positive | 1210467 - 1212971 | 93079.5 |
| hypothetical protein | SAMN04488090_0907 | Not Available | Positive | 1213013 - 1214128 | 41920.1 |
| lipopolysaccharide transport system permease protein | SAMN04488090_0908 | Not Available | Positive | 1214128 - 1214964 | 31936.4 |
| lipopolysaccharide transport system atp-binding protein | SAMN04488090_0909 | Not Available | Positive | 1214988 - 1216286 | 48371.3 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | SAMN04488090_0910 | Not Available | Positive | 1216283 - 1217362 | 40347.4 |
| dolichyl-phosphate-mannose-protein mannosyltransferase | SAMN04488090_0911 | Not Available | Positive | 1217366 - 1219420 | 77952.6 |
| wbqc-like protein family protein | SAMN04488090_0912 | Not Available | Positive | 1219488 - 1220186 | 26836.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
