Siphonobacter aquaeclarae strain DSM 21668

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Siphonobacter

Description

Siphonobacter aquaeclarae strain DSM 21668 is characterized as a Gram-negative, non-motile rod. This strain exhibits facultative aerobe/anaerobe properties, allowing it to thrive in both oxygen-rich and oxygen-poor environments. It falls within the mesophilic temperature range, with an optimal growth temperature of 32°C. The genomic analysis of S. aquaeclarae strain DSM 21668 reveals a single replicon, contributing to its genetic stability and adaptability. The strain is cataloged under the accession number FNGS00000000.1, facilitating its identification and further research within microbial databases. The ecological significance of Siphonobacter aquaeclarae lies in its adaptability to varying oxygen conditions, which may allow it to occupy diverse ecological niches. Its mesophilic nature suggests a potential role in various environments, particularly those with moderate temperatures, where it could contribute to nutrient cycling and organic matter decomposition. Understanding the traits of S. aquaeclarae can provide insights into its potential applications in bioremediation or as a model organism for studying microbial interactions in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSiphonobacter
SpeciesSiphonobacter aquaeclarae
Strainstrain DSM 21668

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Siphonobacter aquaeclarae strain DSM 21668 genome assembly,

Gene Summary

Adenine Count

1418575 bp

Thymine Count

1407705 bp

Guanine Count

1683608 bp

Cytosine Count

1675647 bp

Genome Length

6189941 bp

Protein-coding Genes

4967 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenaseSAMN04488090_0823Not AvailableNegative1125930 - 112636114853.7
hypothetical proteinSAMN04488090_0824Not AvailableNegative1126459 - 112760142602.1
rna polymerase sigma-70 factor, ecf subfamilySAMN04488090_0825Not AvailableNegative1127571 - 112815522469.8
merr hth family regulatory proteinSAMN04488090_0826Not AvailableNegative1128351 - 112919331671.2
phytoene/squalene synthetaseSAMN04488090_0827Not AvailablePositive1129348 - 113017231766.4
isopentenyl-diphosphate delta-isomeraseSAMN04488090_0828Not AvailablePositive1130169 - 113069019989.5
sodium/proton antiporter, nhaa familySAMN04488090_0829Not AvailableNegative1130752 - 113193941825.1
predicted nucleotidyltransferaseSAMN04488090_0830Not AvailableNegative1132095 - 113314440026.6
hypothetical proteinSAMN04488090_0831Not AvailableNegative1133141 - 113388428288.9
predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domainsSAMN04488090_0832Not AvailablePositive1134206 - 113527040915.4

Displaying genes 821 – 830 of 5014 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.