Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase | SAMN04488090_0823 | Not Available | Negative | 1125930 - 1126361 | 14853.7 |
| hypothetical protein | SAMN04488090_0824 | Not Available | Negative | 1126459 - 1127601 | 42602.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_0825 | Not Available | Negative | 1127571 - 1128155 | 22469.8 |
| merr hth family regulatory protein | SAMN04488090_0826 | Not Available | Negative | 1128351 - 1129193 | 31671.2 |
| phytoene/squalene synthetase | SAMN04488090_0827 | Not Available | Positive | 1129348 - 1130172 | 31766.4 |
| isopentenyl-diphosphate delta-isomerase | SAMN04488090_0828 | Not Available | Positive | 1130169 - 1130690 | 19989.5 |
| sodium/proton antiporter, nhaa family | SAMN04488090_0829 | Not Available | Negative | 1130752 - 1131939 | 41825.1 |
| predicted nucleotidyltransferase | SAMN04488090_0830 | Not Available | Negative | 1132095 - 1133144 | 40026.6 |
| hypothetical protein | SAMN04488090_0831 | Not Available | Negative | 1133141 - 1133884 | 28288.9 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN04488090_0832 | Not Available | Positive | 1134206 - 1135270 | 40915.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
