Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-polyprenyl-6-methoxyphenol hydroxylase | SAMN04488090_0803 | Not Available | Positive | 1104582 - 1105700 | 40682.1 |
| wd domain, g-beta repeat | SAMN04488090_0804 | Not Available | Negative | 1105697 - 1106263 | 20275.2 |
| dna-binding transcriptional regulator, marr family | SAMN04488090_0805 | Not Available | Positive | 1106413 - 1106841 | 16560.0 |
| predicted arabinose efflux permease, mfs family | SAMN04488090_0806 | Not Available | Positive | 1106843 - 1108069 | 44205.0 |
| nicotinamidase-related amidase | SAMN04488090_0807 | Not Available | Positive | 1108100 - 1108660 | 20234.5 |
| grpb domain, predicted nucleotidyltransferase, upf0157 family | SAMN04488090_0808 | Not Available | Negative | 1108719 - 1109297 | 21222.4 |
| helix-turn-helix domain-containing protein | SAMN04488090_0809 | Not Available | Negative | 1109366 - 1110184 | 30991.0 |
| protein imua | SAMN04488090_0810 | Not Available | Positive | 1110244 - 1110960 | 26026.5 |
| protein imub | SAMN04488090_0811 | Not Available | Positive | 1110963 - 1112456 | 56148.1 |
| error-prone dna polymerase | SAMN04488090_0812 | Not Available | Positive | 1112453 - 1115629 | 119297.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
