Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| papain family cysteine protease | SAMN04488090_0542 | Not Available | Negative | 729986 - 731308 | 48595.2 |
| hypothetical protein | SAMN04488090_0543 | Not Available | Negative | 731305 - 731763 | 17563.4 |
| hypothetical protein | SAMN04488090_0544 | Not Available | Negative | 731775 - 732722 | 35593.5 |
| hypothetical protein | SAMN04488090_0545 | Not Available | Negative | 732730 - 733341 | 23519.3 |
| caspase domain-containing protein | SAMN04488090_0546 | Not Available | Negative | 733416 - 734498 | 40744.9 |
| caspase domain-containing protein | SAMN04488090_0547 | Not Available | Negative | 734495 - 735607 | 41003.8 |
| hypothetical protein | SAMN04488090_0548 | Not Available | Negative | 735620 - 736363 | 26933.7 |
| fibronectin type iii domain-containing protein | SAMN04488090_0549 | Not Available | Negative | 736360 - 738102 | 62919.9 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN04488090_0550 | Not Available | Positive | 738562 - 739212 | 24222.3 |
| hypothetical protein | SAMN04488090_0551 | Not Available | Negative | 739249 - 739779 | 18277.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
