Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04488090_0522 | Not Available | Negative | 701013 - 702575 | 58555.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_0523 | Not Available | Negative | 702581 - 705976 | 124467.0 |
| parallel beta-helix repeat (two copies) | SAMN04488090_0524 | Not Available | Positive | 706234 - 707586 | 49059.5 |
| pectate lyase superfamily protein | SAMN04488090_0525 | Not Available | Positive | 707597 - 708652 | 37267.4 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_0526 | Not Available | Positive | 708689 - 709801 | 39415.8 |
| sugar phosphate isomerase/epimerase | SAMN04488090_0527 | Not Available | Positive | 709967 - 710806 | 31443.7 |
| putative membrane-bound dehydrogenase domain-containing protein | SAMN04488090_0528 | Not Available | Positive | 710811 - 713651 | 103980.0 |
| inosose dehydratase | SAMN04488090_0529 | Not Available | Positive | 713689 - 714540 | 31994.0 |
| hypothetical protein | SAMN04488090_0530 | Not Available | Positive | 714551 - 715534 | 36235.6 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN04488090_0531 | Not Available | Negative | 715585 - 716589 | 38654.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
