Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peroxiredoxin | SAMN04488090_5031 | Not Available | Negative | 6167710 - 6168834 | 42039.6 |
| hypothetical protein | SAMN04488090_5032 | Not Available | Positive | 6169068 - 6169382 | 11839.3 |
| hypothetical protein | SAMN04488090_5033 | Not Available | Positive | 6169556 - 6170311 | 26819.7 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN04488090_5034 | Not Available | Negative | 6170919 - 6171566 | 24495.1 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN04488090_5035 | Not Available | Negative | 6172022 - 6172732 | 26824.0 |
| protein of unknown function | SAMN04488090_5036 | Not Available | Positive | 6173736 - 6175432 | 58331.9 |
| transcriptional regulator, arsr family | SAMN04488090_5037 | Not Available | Negative | 6175555 - 6175884 | 11948.6 |
| outer membrane protein tolc | SAMN04488090_5038 | Not Available | Positive | 6176146 - 6177441 | 48244.7 |
| rnd family efflux transporter, mfp subunit | SAMN04488090_5039 | Not Available | Positive | 6177496 - 6178569 | 38141.0 |
| multidrug efflux pump subunit acrb | SAMN04488090_5040 | Not Available | Positive | 6178628 - 6181843 | 117904.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
