Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488090_5018 | Not Available | Negative | 6158075 - 6158494 | 14574.4 |
| gas vesicle protein | SAMN04488090_5019 | Not Available | Negative | 6158496 - 6158792 | 10764.0 |
| nusb antitermination factor | SAMN04488090_5020 | Not Available | Negative | 6158944 - 6160095 | 45012.6 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488090_5021 | Not Available | Negative | 6160306 - 6160902 | 23484.7 |
| transcriptional regulator, arac family | SAMN04488090_5022 | Not Available | Positive | 6161045 - 6161914 | 33254.5 |
| transposase | SAMN04488090_5023 | Not Available | Positive | 6162075 - 6162608 | 20864.3 |
| integrase core domain-containing protein | SAMN04488090_5024 | Not Available | Positive | 6162972 - 6163439 | 18347.4 |
| regulatory protein, arsr family | SAMN04488090_5025 | Not Available | Positive | 6163473 - 6163720 | 8921.97 |
| transcriptional regulator, hxlr family | SAMN04488090_5028 | Not Available | Negative | 6165193 - 6165549 | 13621.7 |
| putative quinone oxidoreductase, yhdh/yhfp family | SAMN04488090_5029 | Not Available | Positive | 6165680 - 6166690 | 35811.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
