Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | SAMN04488090_0492 | Not Available | Positive | 648254 - 650128 | 72716.6 |
| iron complex outermembrane recepter protein | SAMN04488090_0493 | Not Available | Positive | 650682 - 653735 | 110256.0 |
| starch-binding associating with outer membrane | SAMN04488090_0494 | Not Available | Positive | 653766 - 655238 | 55851.3 |
| hypothetical protein | SAMN04488090_0495 | Not Available | Positive | 655401 - 656594 | 43787.4 |
| gaf domain-containing protein | SAMN04488090_0496 | Not Available | Negative | 656684 - 658789 | 78322.5 |
| kelch motif-containing protein | SAMN04488090_0497 | Not Available | Negative | 658940 - 660052 | 40652.4 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_0498 | Not Available | Negative | 660372 - 666602 | 219669.0 |
| signal transduction histidine kinase | SAMN04488090_0499 | Not Available | Positive | 667517 - 671428 | 147495.0 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_0500 | Not Available | Negative | 671498 - 672778 | 45671.1 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488090_0501 | Not Available | Positive | 673660 - 674265 | 24232.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
