Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488090_4905 | Not Available | Negative | 6012883 - 6013632 | 28531.7 |
| hypothetical protein | SAMN04488090_4906 | Not Available | Negative | 6013817 - 6015418 | 59661.6 |
| transketolase | SAMN04488090_4907 | Not Available | Negative | 6015424 - 6016341 | 32994.7 |
| nucleoside-diphosphate-sugar epimerase | SAMN04488090_4908 | Not Available | Negative | 6016387 - 6018372 | 75088.2 |
| transketolase | SAMN04488090_4909 | Not Available | Negative | 6018401 - 6019201 | 29126.9 |
| dolichyl-phosphate-mannose-protein mannosyltransferase | SAMN04488090_4910 | Not Available | Negative | 6019244 - 6020977 | 65680.5 |
| wd40-like beta propeller repeat | SAMN04488090_4911 | Not Available | Negative | 6021137 - 6023191 | 76274.7 |
| zinc carboxypeptidase | SAMN04488090_4912 | Not Available | Positive | 6023375 - 6025021 | 59588.6 |
| zinc carboxypeptidase | SAMN04488090_4913 | Not Available | Positive | 6025018 - 6026811 | 67238.3 |
| inner membrane protein | SAMN04488090_4914 | Not Available | Positive | 6026897 - 6027907 | 37482.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
