Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_4885 | Not Available | Positive | 5987736 - 5988947 | 45908.9 |
| threonine/homoserine efflux transporter rhta | SAMN04488090_4886 | Not Available | Negative | 5988944 - 5989852 | 32878.7 |
| transcriptional regulator, asnc family | SAMN04488090_4887 | Not Available | Positive | 5989954 - 5990433 | 18603.6 |
| arac-type dna-binding protein | SAMN04488090_4888 | Not Available | Negative | 5990434 - 5991345 | 35536.7 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488090_4889 | Not Available | Positive | 5991599 - 5992378 | 27176.6 |
| l-fuconate dehydratase | SAMN04488090_4890 | Not Available | Positive | 5992375 - 5993598 | 44957.9 |
| solute:na+ symporter, sss family | SAMN04488090_4891 | Not Available | Positive | 5993595 - 5995199 | 57578.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_4892 | Not Available | Positive | 5995544 - 5998594 | 112597.0 |
| starch-binding associating with outer membrane | SAMN04488090_4893 | Not Available | Positive | 5998599 - 6000116 | 56915.6 |
| alpha-l-fucosidase 2 | SAMN04488090_4894 | Not Available | Positive | 6000116 - 6002452 | 86030.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
