Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488090_4824 | Not Available | Negative | 5919090 - 5920901 | 68865.2 |
| hypothetical protein | SAMN04488090_4825 | Not Available | Negative | 5921000 - 5921143 | 5381.88 |
| sialidase-1 | SAMN04488090_4826 | Not Available | Positive | 5921329 - 5922453 | 41070.1 |
| resolvase, n terminal domain | SAMN04488090_4827 | Not Available | Positive | 5923261 - 5923881 | 23276.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_4828 | Not Available | Positive | 5924019 - 5927381 | 122642.0 |
| starch-binding associating with outer membrane | SAMN04488090_4829 | Not Available | Positive | 5927406 - 5928992 | 58832.8 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN04488090_4830 | Not Available | Negative | 5929050 - 5929832 | 28277.0 |
| nudix domain-containing protein | SAMN04488090_4831 | Not Available | Positive | 5930037 - 5930555 | 19609.5 |
| nucleoside-diphosphate-sugar epimerase | SAMN04488090_4832 | Not Available | Negative | 5930544 - 5931551 | 36455.9 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488090_4833 | Not Available | Negative | 5931614 - 5932204 | 22334.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
