Siphonobacter aquaeclarae strain DSM 21668

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Siphonobacter

Description

Siphonobacter aquaeclarae strain DSM 21668 is characterized as a Gram-negative, non-motile rod. This strain exhibits facultative aerobe/anaerobe properties, allowing it to thrive in both oxygen-rich and oxygen-poor environments. It falls within the mesophilic temperature range, with an optimal growth temperature of 32°C. The genomic analysis of S. aquaeclarae strain DSM 21668 reveals a single replicon, contributing to its genetic stability and adaptability. The strain is cataloged under the accession number FNGS00000000.1, facilitating its identification and further research within microbial databases. The ecological significance of Siphonobacter aquaeclarae lies in its adaptability to varying oxygen conditions, which may allow it to occupy diverse ecological niches. Its mesophilic nature suggests a potential role in various environments, particularly those with moderate temperatures, where it could contribute to nutrient cycling and organic matter decomposition. Understanding the traits of S. aquaeclarae can provide insights into its potential applications in bioremediation or as a model organism for studying microbial interactions in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSiphonobacter
SpeciesSiphonobacter aquaeclarae
Strainstrain DSM 21668

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Siphonobacter aquaeclarae strain DSM 21668 genome assembly,

Gene Summary

Adenine Count

1418575 bp

Thymine Count

1407705 bp

Guanine Count

1683608 bp

Cytosine Count

1675647 bp

Genome Length

6189941 bp

Protein-coding Genes

4967 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha-l-fucosidaseSAMN04488090_4804Not AvailablePositive5884825 - 588624654216.2
iron complex outermembrane recepter proteinSAMN04488090_4805Not AvailableNegative5886312 - 588868786816.1
2-polyprenyl-6-methoxyphenol hydroxylaseSAMN04488090_4806Not AvailableNegative5888841 - 589034654541.8
transcriptional regulator, arac familySAMN04488090_4807Not AvailableNegative5890387 - 589119930238.4
3',5'-cyclic amp phosphodiesterase cpdaSAMN04488090_4808Not AvailableNegative5891396 - 589221130323.9
carboxypeptidase regulatory-like domain-containing proteinSAMN04488090_4809Not AvailablePositive5892606 - 5895800118153.0
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN04488090_4810Not AvailablePositive5895800 - 589658229463.4
signal transduction histidine kinaseSAMN04488090_4811Not AvailablePositive5896570 - 589785949089.9
outer membrane receptor proteins, mostly fe transportSAMN04488090_4812Not AvailablePositive5897901 - 590030089373.9
6-phosphofructokinase 2SAMN04488090_4813Not AvailableNegative5900288 - 590120231971.5

Displaying genes 4781 – 4790 of 5014 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.