Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-fucosidase | SAMN04488090_4804 | Not Available | Positive | 5884825 - 5886246 | 54216.2 |
| iron complex outermembrane recepter protein | SAMN04488090_4805 | Not Available | Negative | 5886312 - 5888687 | 86816.1 |
| 2-polyprenyl-6-methoxyphenol hydroxylase | SAMN04488090_4806 | Not Available | Negative | 5888841 - 5890346 | 54541.8 |
| transcriptional regulator, arac family | SAMN04488090_4807 | Not Available | Negative | 5890387 - 5891199 | 30238.4 |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN04488090_4808 | Not Available | Negative | 5891396 - 5892211 | 30323.9 |
| carboxypeptidase regulatory-like domain-containing protein | SAMN04488090_4809 | Not Available | Positive | 5892606 - 5895800 | 118153.0 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488090_4810 | Not Available | Positive | 5895800 - 5896582 | 29463.4 |
| signal transduction histidine kinase | SAMN04488090_4811 | Not Available | Positive | 5896570 - 5897859 | 49089.9 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488090_4812 | Not Available | Positive | 5897901 - 5900300 | 89373.9 |
| 6-phosphofructokinase 2 | SAMN04488090_4813 | Not Available | Negative | 5900288 - 5901202 | 31971.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
