Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urease subunit gamma | SAMN04488090_4794 | Not Available | Negative | 5872743 - 5873045 | 11108.5 |
| hypothetical protein | SAMN04488090_4795 | Not Available | Negative | 5873196 - 5873576 | 14141.2 |
| hypothetical protein | SAMN04488090_4796 | Not Available | Negative | 5873887 - 5874528 | 21881.4 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488090_4797 | Not Available | Negative | 5874620 - 5875195 | 22274.9 |
| catechol 2,3-dioxygenase | SAMN04488090_4798 | Not Available | Positive | 5875330 - 5875704 | 14515.1 |
| capsule assembly protein wzi | SAMN04488090_4799 | Not Available | Negative | 5875724 - 5877208 | 55636.7 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488090_4800 | Not Available | Positive | 5877680 - 5878267 | 22523.2 |
| fecr family protein | SAMN04488090_4801 | Not Available | Positive | 5878337 - 5879377 | 38515.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_4802 | Not Available | Positive | 5879524 - 5882976 | 128291.0 |
| starch-binding associating with outer membrane | SAMN04488090_4803 | Not Available | Positive | 5882979 - 5884772 | 68279.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
