Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferrous iron transport protein b | SAMN04488090_4764 | Not Available | Positive | 5836466 - 5838571 | 78323.0 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN04488090_4765 | Not Available | Positive | 5839317 - 5840654 | 50706.9 |
| response regulator receiver domain-containing protein | SAMN04488090_4766 | Not Available | Positive | 5840651 - 5841031 | 14460.5 |
| adenylate cyclase, class 3 | SAMN04488090_4767 | Not Available | Positive | 5841021 - 5842064 | 38526.6 |
| hd domain-containing protein | SAMN04488090_4768 | Not Available | Positive | 5842064 - 5842642 | 22105.1 |
| heat repeat-containing protein | SAMN04488090_4769 | Not Available | Negative | 5842625 - 5845789 | 116622.0 |
| l-rhamnose mutarotase | SAMN04488090_4770 | Not Available | Negative | 5845818 - 5846147 | 12536.2 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | SAMN04488090_4771 | Not Available | Negative | 5846163 - 5847317 | 42155.7 |
| gh3 auxin-responsive promoter | SAMN04488090_4772 | Not Available | Negative | 5847321 - 5848823 | 57315.5 |
| hypothetical protein | SAMN04488090_4773 | Not Available | Negative | 5848885 - 5849190 | 11613.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
