Siphonobacter aquaeclarae strain DSM 21668

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Siphonobacter

Description

Siphonobacter aquaeclarae strain DSM 21668 is characterized as a Gram-negative, non-motile rod. This strain exhibits facultative aerobe/anaerobe properties, allowing it to thrive in both oxygen-rich and oxygen-poor environments. It falls within the mesophilic temperature range, with an optimal growth temperature of 32°C. The genomic analysis of S. aquaeclarae strain DSM 21668 reveals a single replicon, contributing to its genetic stability and adaptability. The strain is cataloged under the accession number FNGS00000000.1, facilitating its identification and further research within microbial databases. The ecological significance of Siphonobacter aquaeclarae lies in its adaptability to varying oxygen conditions, which may allow it to occupy diverse ecological niches. Its mesophilic nature suggests a potential role in various environments, particularly those with moderate temperatures, where it could contribute to nutrient cycling and organic matter decomposition. Understanding the traits of S. aquaeclarae can provide insights into its potential applications in bioremediation or as a model organism for studying microbial interactions in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSiphonobacter
SpeciesSiphonobacter aquaeclarae
Strainstrain DSM 21668

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Siphonobacter aquaeclarae strain DSM 21668 genome assembly,

Gene Summary

Adenine Count

1418575 bp

Thymine Count

1407705 bp

Guanine Count

1683608 bp

Cytosine Count

1675647 bp

Genome Length

6189941 bp

Protein-coding Genes

4967 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
two component transcriptional regulator, luxr familySAMN04488090_4672Not AvailablePositive5732685 - 573332923800.0
starch-binding associating with outer membraneSAMN04488090_4674Not AvailablePositive5736943 - 573846955668.6
hypothetical proteinSAMN04488090_4675Not AvailablePositive5738833 - 573925815690.2
hypothetical proteinSAMN04488090_4676Not AvailableNegative5739294 - 573986923022.7
hypothetical proteinSAMN04488090_4677Not AvailablePositive5740341 - 574105427286.8
hypothetical proteinSAMN04488090_4678Not AvailablePositive5741023 - 574194633649.5
hypothetical proteinSAMN04488090_4679Not AvailablePositive5741943 - 574381470299.0
uncharacterized iron-regulated proteinSAMN04488090_4680Not AvailableNegative5743881 - 574473531404.8
acetyltransferase (gnat) domain-containing proteinSAMN04488090_4681Not AvailableNegative5744739 - 574513714862.9
thioredoxinSAMN04488090_4682Not AvailablePositive5745332 - 574594323283.6

Displaying genes 4651 – 4660 of 5014 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.