Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na+/proline symporter | SAMN04488090_4652 | Not Available | Negative | 5698825 - 5700738 | 70504.0 |
| mannan endo-1,4-beta-mannosidase | SAMN04488090_4653 | Not Available | Negative | 5700770 - 5701906 | 43627.4 |
| susd family protein | SAMN04488090_4654 | Not Available | Negative | 5702032 - 5703627 | 59223.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_4655 | Not Available | Negative | 5703671 - 5706733 | 111346.0 |
| arac-type dna-binding protein | SAMN04488090_4656 | Not Available | Positive | 5706993 - 5707865 | 34072.8 |
| gluconate 2-dehydrogenase subunit 3 | SAMN04488090_4657 | Not Available | Positive | 5707924 - 5708403 | 17085.4 |
| choline dehydrogenase | SAMN04488090_4658 | Not Available | Positive | 5708408 - 5710114 | 64409.0 |
| hypothetical protein | SAMN04488090_4659 | Not Available | Positive | 5710148 - 5710720 | 20849.2 |
| predicted protein | SAMN04488090_4660 | Not Available | Negative | 5710819 - 5711799 | 35923.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_4661 | Not Available | Positive | 5711890 - 5712531 | 25009.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
