Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488090_4632 | Not Available | Positive | 5672338 - 5673612 | 46558.6 |
| enoyl-[acyl-carrier-protein] reductase | SAMN04488090_4633 | Not Available | Negative | 5673933 - 5674751 | 29536.3 |
| two component transcriptional regulator, luxr family | SAMN04488090_4634 | Not Available | Negative | 5674870 - 5675508 | 24165.3 |
| predicted n-acetyltransferase yhbs | SAMN04488090_4635 | Not Available | Positive | 5675641 - 5676087 | 16517.0 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN04488090_4636 | Not Available | Negative | 5676098 - 5677141 | 40363.5 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04488090_4637 | Not Available | Negative | 5677101 - 5677859 | 27413.1 |
| hypothetical protein | SAMN04488090_4638 | Not Available | Negative | 5678371 - 5678877 | 17565.7 |
| outer membrane protein assembly factor bamb, contains pqq-like beta-propeller repeat | SAMN04488090_4639 | Not Available | Negative | 5679033 - 5680877 | 67972.9 |
| starch-binding associating with outer membrane | SAMN04488090_4640 | Not Available | Negative | 5680994 - 5682679 | 63424.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_4641 | Not Available | Negative | 5682687 - 5686256 | 131886.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
