Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa carboxylase, biotin carboxylase subunit | SAMN04488090_4561 | Not Available | Positive | 5595406 - 5596746 | 49067.9 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN04488090_4562 | Not Available | Positive | 5596882 - 5598321 | 51900.9 |
| hypothetical protein | SAMN04488090_4563 | Not Available | Positive | 5598418 - 5599437 | 39252.2 |
| hypothetical protein | SAMN04488090_4564 | Not Available | Positive | 5599448 - 5600422 | 36994.0 |
| hypothetical protein | SAMN04488090_4565 | Not Available | Positive | 5600438 - 5601433 | 38492.7 |
| hypothetical protein | SAMN04488090_4566 | Not Available | Positive | 5601448 - 5602434 | 37722.7 |
| ornithine--oxo-acid transaminase | SAMN04488090_4567 | Not Available | Negative | 5602600 - 5603829 | 44730.5 |
| hypothetical protein | SAMN04488090_4568 | Not Available | Negative | 5603899 - 5604063 | 6112.28 |
| hypothetical protein | SAMN04488090_4569 | Not Available | Positive | 5604216 - 5605061 | 31374.1 |
| transcriptional regulator, badm/rrf2 family | SAMN04488090_4570 | Not Available | Negative | 5605096 - 5605542 | 16448.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
