Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-his | Not Available | Not Available | Positive | 5549789 - 5549862 | Not Available |
| superoxide dismutase, fe-mn family | SAMN04488090_4512 | Not Available | Negative | 5549971 - 5550579 | 22346.1 |
| trna(adenine34) deaminase | SAMN04488090_4513 | Not Available | Negative | 5550686 - 5551120 | 15747.1 |
| hypothetical protein | SAMN04488090_4514 | Not Available | Negative | 5551120 - 5552007 | 32667.1 |
| protein of unknown function | SAMN04488090_4515 | Not Available | Positive | 5552151 - 5553644 | 55819.1 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN04488090_4516 | Not Available | Negative | 5553806 - 5554198 | 14383.2 |
| protein sco1/2 | SAMN04488090_4517 | Not Available | Negative | 5554318 - 5554956 | 23660.5 |
| hypothetical protein | SAMN04488090_4518 | Not Available | Negative | 5554989 - 5555387 | 14757.7 |
| dna replication and repair protein recn | SAMN04488090_4519 | Not Available | Negative | 5555405 - 5557093 | 63422.5 |
| hypothetical protein | SAMN04488090_4520 | Not Available | Negative | 5557146 - 5557367 | 7922.68 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
