Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycxb-like protein | SAMN04488090_4351 | Not Available | Positive | 5361694 - 5362257 | 22165.3 |
| protein of unknown function | SAMN04488090_4352 | Not Available | Positive | 5362512 - 5363282 | 29168.9 |
| choline dehydrogenase | SAMN04488090_4353 | Not Available | Positive | 5363410 - 5365155 | 64118.4 |
| four helix bundle protein | SAMN04488090_4354 | Not Available | Positive | 5365200 - 5365652 | 17019.0 |
| gluconate 2-dehydrogenase subunit 3 | SAMN04488090_4355 | Not Available | Positive | 5365746 - 5366360 | 22635.3 |
| glycosidase | SAMN04488090_4356 | Not Available | Negative | 5366371 - 5367906 | 57703.5 |
| alginate lyase | SAMN04488090_4357 | Not Available | Negative | 5368078 - 5369223 | 43680.6 |
| alpha-d-xyloside xylohydrolase | SAMN04488090_4358 | Not Available | Negative | 5369224 - 5371347 | 79523.3 |
| alpha-l-fucosidase 2 | SAMN04488090_4359 | Not Available | Negative | 5371355 - 5373859 | 92319.3 |
| vitamin b12 transporter | SAMN04488090_4360 | Not Available | Positive | 5374261 - 5376210 | 72462.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
