Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_0422 | Not Available | Positive | 557669 - 558124 | 17620.2 |
| fecr family protein | SAMN04488090_0423 | Not Available | Positive | 558220 - 559188 | 36840.0 |
| hypothetical protein | SAMN04488090_0424 | Not Available | Negative | 559123 - 559257 | 4904.95 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_0425 | Not Available | Positive | 559277 - 562807 | 128982.0 |
| starch-binding associating with outer membrane | SAMN04488090_0426 | Not Available | Positive | 562812 - 564509 | 63214.7 |
| hypothetical protein | SAMN04488090_0427 | Not Available | Positive | 564513 - 564884 | 13422.4 |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN04488090_0428 | Not Available | Positive | 564927 - 565997 | 39680.1 |
| cytochrome c | SAMN04488090_0429 | Not Available | Positive | 565999 - 568626 | 96490.2 |
| predicted dehydrogenase | SAMN04488090_0430 | Not Available | Positive | 568729 - 569922 | 44143.4 |
| predicted dehydrogenase | SAMN04488090_0431 | Not Available | Positive | 569919 - 570869 | 34007.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
