Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted transcriptional regulator ydee, contains arac-type dna-binding domain | SAMN04488090_0412 | Not Available | Positive | 548893 - 549336 | 16114.8 |
| hypothetical protein | SAMN04488090_0413 | Not Available | Positive | 549343 - 549690 | 13944.3 |
| beta-lactamase class a | SAMN04488090_0414 | Not Available | Positive | 549687 - 550586 | 33390.0 |
| uncharacterized conserved protein, duf2252 family | SAMN04488090_0415 | Not Available | Negative | 550544 - 551749 | 46622.6 |
| predicted acyltransferase | SAMN04488090_0416 | Not Available | Negative | 551797 - 552966 | 43881.0 |
| glycosyl hydrolase family 20, catalytic domain | SAMN04488090_0417 | Not Available | Negative | 552963 - 554054 | 41475.9 |
| hypothetical protein | SAMN04488090_0418 | Not Available | Negative | 554184 - 554489 | 11715.3 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488090_0419 | Not Available | Positive | 554645 - 555694 | 38209.0 |
| histidine kinase | SAMN04488090_0420 | Not Available | Positive | 555691 - 556740 | 39556.2 |
| two component transcriptional regulator, lyttr family | SAMN04488090_0421 | Not Available | Positive | 556721 - 557395 | 26061.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
