Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside-diphosphate-sugar epimerase | SAMN04488090_4191 | Not Available | Negative | 5166349 - 5167272 | 33156.5 |
| uncharacterized domain 1-containing protein | SAMN04488090_4192 | Not Available | Negative | 5167298 - 5167750 | 16360.8 |
| transcriptional regulator, tetr family | SAMN04488090_4193 | Not Available | Negative | 5167752 - 5168372 | 24200.4 |
| phosphosulfolactate synthase | SAMN04488090_4194 | Not Available | Positive | 5168588 - 5169343 | 28292.1 |
| membrane-associated protein | SAMN04488090_4195 | Not Available | Positive | 5169368 - 5170021 | 24241.4 |
| shikimate dehydrogenase | SAMN04488090_4196 | Not Available | Positive | 5170135 - 5170896 | 28624.1 |
| diaminohydroxyphosphoribosylaminopyrimidine deaminase | SAMN04488090_4197 | Not Available | Negative | 5170902 - 5171942 | 38923.7 |
| hypothetical protein | SAMN04488090_4198 | Not Available | Negative | 5172064 - 5172537 | 17550.9 |
| hypothetical protein | SAMN04488090_4199 | Not Available | Negative | 5172708 - 5173265 | 21004.7 |
| dna mismatch repair protein muts | SAMN04488090_4200 | Not Available | Positive | 5173508 - 5176150 | 98973.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
