Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| large subunit ribosomal protein l1 | SAMN04488090_4151 | Not Available | Positive | 5097962 - 5098660 | 24937.6 |
| lsu ribosomal protein l10p | SAMN04488090_4152 | Not Available | Positive | 5098664 - 5099200 | 19606.8 |
| lsu ribosomal protein l12p | SAMN04488090_4153 | Not Available | Positive | 5099312 - 5099695 | 13019.7 |
| dna-directed rna polymerase subunit beta | SAMN04488090_4154 | Not Available | Positive | 5100116 - 5103979 | 144830.0 |
| dna-directed rna polymerase subunit beta' | SAMN04488090_4155 | Not Available | Positive | 5104161 - 5108480 | 160087.0 |
| core-2/i-branching enzyme | SAMN04488090_4156 | Not Available | Negative | 5108555 - 5109490 | 36247.5 |
| carbohydrate binding module (family 6) | SAMN04488090_4157 | Not Available | Positive | 5109747 - 5111639 | 65573.4 |
| hypothetical protein | SAMN04488090_4158 | Not Available | Positive | 5111680 - 5113341 | 62246.9 |
| replication restart dna helicase pria | SAMN04488090_4159 | Not Available | Negative | 5113499 - 5115994 | 94486.9 |
| 23s rrna pseudouridine1911/1915/1917 synthase | SAMN04488090_4160 | Not Available | Positive | 5116200 - 5116916 | 27326.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
