Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate/(r)-2-methylmalate dehydratase large subunit | SAMN04488090_4100 | Not Available | Positive | 5039516 - 5040925 | 50375.2 |
| 3-isopropylmalate dehydratase, small subunit | SAMN04488090_4102 | Not Available | Positive | 5041489 - 5042085 | 22097.0 |
| d-citramalate synthase | SAMN04488090_4103 | Not Available | Positive | 5042091 - 5043602 | 55969.9 |
| 3-isopropylmalate dehydrogenase | SAMN04488090_4104 | Not Available | Positive | 5043694 - 5044764 | 38962.9 |
| 2-isopropylmalate synthase | SAMN04488090_4105 | Not Available | Positive | 5045041 - 5046180 | 41944.4 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488090_4106 | Not Available | Positive | 5046401 - 5047015 | 24300.1 |
| fecr family protein | SAMN04488090_4107 | Not Available | Positive | 5047197 - 5048306 | 41372.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_4108 | Not Available | Positive | 5048501 - 5052028 | 130163.0 |
| starch-binding associating with outer membrane | SAMN04488090_4109 | Not Available | Positive | 5052044 - 5053900 | 69132.4 |
| fg-gap repeat-containing protein | SAMN04488090_4110 | Not Available | Positive | 5054032 - 5057334 | 121674.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
