Siphonobacter aquaeclarae strain DSM 21668

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Siphonobacter

Description

Siphonobacter aquaeclarae strain DSM 21668 is characterized as a Gram-negative, non-motile rod. This strain exhibits facultative aerobe/anaerobe properties, allowing it to thrive in both oxygen-rich and oxygen-poor environments. It falls within the mesophilic temperature range, with an optimal growth temperature of 32°C. The genomic analysis of S. aquaeclarae strain DSM 21668 reveals a single replicon, contributing to its genetic stability and adaptability. The strain is cataloged under the accession number FNGS00000000.1, facilitating its identification and further research within microbial databases. The ecological significance of Siphonobacter aquaeclarae lies in its adaptability to varying oxygen conditions, which may allow it to occupy diverse ecological niches. Its mesophilic nature suggests a potential role in various environments, particularly those with moderate temperatures, where it could contribute to nutrient cycling and organic matter decomposition. Understanding the traits of S. aquaeclarae can provide insights into its potential applications in bioremediation or as a model organism for studying microbial interactions in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSiphonobacter
SpeciesSiphonobacter aquaeclarae
Strainstrain DSM 21668

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Siphonobacter aquaeclarae strain DSM 21668 genome assembly,

Gene Summary

Adenine Count

1418575 bp

Thymine Count

1407705 bp

Guanine Count

1683608 bp

Cytosine Count

1675647 bp

Genome Length

6189941 bp

Protein-coding Genes

4967 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate/(r)-2-methylmalate dehydratase large subunitSAMN04488090_4100Not AvailablePositive5039516 - 504092550375.2
3-isopropylmalate dehydratase, small subunitSAMN04488090_4102Not AvailablePositive5041489 - 504208522097.0
d-citramalate synthaseSAMN04488090_4103Not AvailablePositive5042091 - 504360255969.9
3-isopropylmalate dehydrogenaseSAMN04488090_4104Not AvailablePositive5043694 - 504476438962.9
2-isopropylmalate synthaseSAMN04488090_4105Not AvailablePositive5045041 - 504618041944.4
rna polymerase sigma factor, sigma-70 familySAMN04488090_4106Not AvailablePositive5046401 - 504701524300.1
fecr family proteinSAMN04488090_4107Not AvailablePositive5047197 - 504830641372.4
tonb-linked outer membrane protein, susc/raga familySAMN04488090_4108Not AvailablePositive5048501 - 5052028130163.0
starch-binding associating with outer membraneSAMN04488090_4109Not AvailablePositive5052044 - 505390069132.4
fg-gap repeat-containing proteinSAMN04488090_4110Not AvailablePositive5054032 - 5057334121674.0

Displaying genes 4081 – 4090 of 5014 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.