Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm domain-containing protein | SAMN04488090_4080 | Not Available | Positive | 5014190 - 5014837 | 23062.4 |
| hypothetical protein | SAMN04488090_4081 | Not Available | Negative | 5015221 - 5015640 | 15026.0 |
| starch-binding associating with outer membrane | SAMN04488090_4082 | Not Available | Negative | 5016064 - 5017599 | 56495.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_4083 | Not Available | Negative | 5017690 - 5021154 | 127016.0 |
| fecr family protein | SAMN04488090_4084 | Not Available | Negative | 5021492 - 5022613 | 42710.6 |
| l-2-hydroxyglutarate oxidase | SAMN04488090_4085 | Not Available | Negative | 5022824 - 5024023 | 44083.5 |
| probable phosphoglycerate mutase | SAMN04488090_4086 | Not Available | Negative | 5024080 - 5024727 | 25019.5 |
| 1,4-dihydroxy-2-naphthoyl-coa hydrolase | SAMN04488090_4087 | Not Available | Positive | 5024949 - 5025368 | 15182.5 |
| regulator of rnase e activity rraa | SAMN04488090_4088 | Not Available | Negative | 5025481 - 5026401 | 33953.0 |
| bile acid:na+ symporter, bass family | SAMN04488090_4089 | Not Available | Negative | 5026449 - 5027741 | 45827.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
