Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gh3 auxin-responsive promoter | SAMN04488090_3960 | Not Available | Negative | 4870072 - 4871634 | 59859.5 |
| glycerophosphoryl diester phosphodiesterase | SAMN04488090_3961 | Not Available | Negative | 4871721 - 4872590 | 32854.7 |
| penicillin amidase | SAMN04488090_3962 | Not Available | Positive | 4872707 - 4875142 | 91402.0 |
| hypothetical protein | SAMN04488090_3963 | Not Available | Positive | 4875148 - 4875522 | 13433.5 |
| periplasmic chaperone for outer membrane proteins skp | SAMN04488090_3964 | Not Available | Positive | 4875626 - 4876240 | 22851.0 |
| ssra-binding protein | SAMN04488090_3965 | Not Available | Positive | 4876312 - 4876773 | 17852.6 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b | SAMN04488090_3966 | Not Available | Positive | 4876947 - 4878407 | 53964.7 |
| peroxiredoxin | SAMN04488090_3967 | Not Available | Positive | 4878407 - 4879522 | 40993.4 |
| pyrroline-5-carboxylate reductase | SAMN04488090_3968 | Not Available | Positive | 4879542 - 4880342 | 28655.0 |
| tonb protein c-terminal | SAMN04488090_3969 | Not Available | Negative | 4880343 - 4881353 | 36442.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
