Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conserved hypothetical protein, steroid delta-isomerase-related | SAMN04488090_3949 | Not Available | Positive | 4858501 - 4858920 | 15495.6 |
| conserved hypothetical protein, steroid delta-isomerase-related | SAMN04488090_3950 | Not Available | Positive | 4858962 - 4859390 | 15994.6 |
| cytochrome c | SAMN04488090_3951 | Not Available | Positive | 4859543 - 4860514 | 35138.2 |
| rna polymerase, sigma subunit, ecf family | SAMN04488090_3952 | Not Available | Positive | 4860645 - 4861244 | 23469.0 |
| fecr family protein | SAMN04488090_3953 | Not Available | Positive | 4861332 - 4862444 | 40860.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_3954 | Not Available | Positive | 4862640 - 4865972 | 123030.0 |
| starch-binding associating with outer membrane | SAMN04488090_3955 | Not Available | Positive | 4865988 - 4867619 | 61698.6 |
| (2fe-2s) ferredoxin | SAMN04488090_3956 | Not Available | Positive | 4868058 - 4868363 | 11354.9 |
| outer membrane protein ompa | SAMN04488090_3957 | Not Available | Positive | 4868564 - 4869286 | 25630.7 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488090_3958 | Not Available | Positive | 4869292 - 4869903 | 22243.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
