Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488090_3929 | Not Available | Negative | 4832330 - 4832512 | 6512.32 |
| multidrug efflux pump subunit acrb | SAMN04488090_3930 | Not Available | Negative | 4832730 - 4836176 | 127856.0 |
| rnd family efflux transporter, mfp subunit | SAMN04488090_3931 | Not Available | Negative | 4836209 - 4837336 | 40555.1 |
| outer membrane protein tolc | SAMN04488090_3932 | Not Available | Negative | 4837380 - 4838753 | 51274.6 |
| transcriptional regulator, tetr family | SAMN04488090_3933 | Not Available | Negative | 4838823 - 4839425 | 23462.6 |
| ring-1,2-phenylacetyl-coa epoxidase subunit paae | SAMN04488090_3934 | Not Available | Positive | 4839950 - 4840975 | 37980.9 |
| pa14 domain-containing protein | SAMN04488090_3935 | Not Available | Positive | 4841082 - 4842935 | 67063.3 |
| hypothetical protein | SAMN04488090_3936 | Not Available | Positive | 4843007 - 4844962 | 71493.9 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488090_3937 | Not Available | Positive | 4845416 - 4846483 | 41224.6 |
| hypothetical protein | SAMN04488090_3938 | Not Available | Negative | 4846532 - 4847602 | 41434.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
