Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized lipoprotein yddw, upf0748 family | SAMN04488090_3919 | Not Available | Negative | 4818848 - 4820356 | 58361.9 |
| cobalt-zinc-cadmium resistance protein czca | SAMN04488090_3920 | Not Available | Negative | 4820555 - 4823707 | 115085.0 |
| hypothetical protein | SAMN04488090_3921 | Not Available | Negative | 4823713 - 4824018 | 11457.0 |
| rnd family efflux transporter, mfp subunit | SAMN04488090_3922 | Not Available | Negative | 4824031 - 4824990 | 34989.4 |
| outer membrane protein, cobalt-zinc-cadmium efflux system | SAMN04488090_3923 | Not Available | Negative | 4824984 - 4826219 | 47067.3 |
| Trna-phe | Not Available | Not Available | Positive | 4826556 - 4826631 | Not Available |
| glucose-1-phosphate thymidylyltransferase | SAMN04488090_3925 | Not Available | Positive | 4826913 - 4827917 | 36926.5 |
| tetratricopeptide repeat-containing protein | SAMN04488090_3926 | Not Available | Positive | 4828046 - 4829743 | 63997.1 |
| protein of unknown function | SAMN04488090_3927 | Not Available | Positive | 4829766 - 4830614 | 32102.8 |
| septal ring factor envc, activator of murein hydrolases amia and amib | SAMN04488090_3928 | Not Available | Positive | 4830671 - 4832299 | 60468.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
