Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 1c | SAMN04488090_3909 | Not Available | Negative | 4809064 - 4811385 | 86976.1 |
| uncharacterized membrane protein yckc, rdd family | SAMN04488090_3910 | Not Available | Negative | 4811390 - 4811845 | 16909.9 |
| homogentisate 1,2-dioxygenase | SAMN04488090_3911 | Not Available | Positive | 4812107 - 4813264 | 44259.4 |
| phenylalanine 4-hydroxylase | SAMN04488090_3912 | Not Available | Positive | 4813278 - 4814048 | 29732.6 |
| 4-hydroxyphenylpyruvate dioxygenase | SAMN04488090_3913 | Not Available | Positive | 4814061 - 4815188 | 41797.5 |
| transcriptional regulator, marr family | SAMN04488090_3914 | Not Available | Positive | 4815289 - 4815723 | 16789.2 |
| fumarylacetoacetate hydrolase | SAMN04488090_3915 | Not Available | Positive | 4815751 - 4816956 | 44665.2 |
| nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) family | SAMN04488090_3916 | Not Available | Positive | 4816943 - 4817779 | 30916.1 |
| hypothetical protein | SAMN04488090_3917 | Not Available | Negative | 4817768 - 4818016 | 8972.2 |
| protein of unknown function | SAMN04488090_3918 | Not Available | Positive | 4818034 - 4818750 | 27231.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
