Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488090_0382 | Not Available | Negative | 518272 - 519222 | 35394.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_0383 | Not Available | Negative | 519325 - 519957 | 24728.3 |
| h+/cl-antiporter clca | SAMN04488090_0384 | Not Available | Negative | 520168 - 521445 | 45360.8 |
| hypothetical protein | SAMN04488090_0385 | Not Available | Negative | 521449 - 521661 | 8304.98 |
| two-component system, unclassified family, response regulator | SAMN04488090_0386 | Not Available | Negative | 521627 - 522064 | 16646.1 |
| hypothetical protein | SAMN04488090_0387 | Not Available | Negative | 522106 - 522513 | 15741.7 |
| predicted dehydrogenase | SAMN04488090_0388 | Not Available | Negative | 522681 - 524012 | 49592.4 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN04488090_0389 | Not Available | Negative | 524044 - 524886 | 30762.2 |
| thioredoxin-like | SAMN04488090_0390 | Not Available | Positive | 525096 - 526319 | 45382.6 |
| fr47-like protein | SAMN04488090_0391 | Not Available | Negative | 526343 - 527074 | 27702.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
