Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitronate monooxygenase | SAMN04488090_0372 | Not Available | Negative | 500203 - 501270 | 38773.7 |
| transcriptional regulator, padr family | SAMN04488090_0373 | Not Available | Positive | 501413 - 501745 | 12169.9 |
| ftsx-like permease family protein | SAMN04488090_0374 | Not Available | Positive | 501730 - 504294 | 95391.7 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488090_0375 | Not Available | Negative | 504666 - 507065 | 89771.9 |
| phosphoesterase, mj0936 family | SAMN04488090_0376 | Not Available | Negative | 507211 - 507939 | 27296.9 |
| hypothetical protein | SAMN04488090_0377 | Not Available | Negative | 507951 - 509054 | 40852.7 |
| beta-lactamase class c | SAMN04488090_0378 | Not Available | Positive | 509273 - 510406 | 41229.5 |
| outer membrane protein assembly factor bamb, contains pqq-like beta-propeller repeat | SAMN04488090_0379 | Not Available | Negative | 510472 - 512880 | 86778.5 |
| starch-binding associating with outer membrane | SAMN04488090_0380 | Not Available | Negative | 512930 - 514696 | 65297.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_0381 | Not Available | Negative | 514698 - 518237 | 131016.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
