Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnd family efflux transporter, mfp subunit | SAMN04488090_3798 | Not Available | Positive | 4690313 - 4691386 | 38986.6 |
| outer membrane protein, multidrug efflux system | SAMN04488090_3799 | Not Available | Positive | 4691433 - 4692737 | 48057.5 |
| transposase | SAMN04488090_3800 | Not Available | Negative | 4692800 - 4693198 | 15363.9 |
| uncharacterized conserved protein phnb, glyoxalase superfamily | SAMN04488090_3801 | Not Available | Negative | 4693527 - 4693898 | 13701.1 |
| helix-turn-helix domain-containing protein | SAMN04488090_3802 | Not Available | Negative | 4693971 - 4694765 | 30412.1 |
| hypothetical protein | SAMN04488090_3803 | Not Available | Negative | 4694767 - 4695192 | 15314.2 |
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed/haloacid dehalogenase superfamily, subfamily ia, variant 1 with third motif having dx(3-4)d or dx(3-4)e | SAMN04488090_3805 | Not Available | Positive | 4697124 - 4697798 | 25043.8 |
| beta-glucosidase | SAMN04488090_3806 | Not Available | Positive | 4697954 - 4700914 | 109027.0 |
| outer membrane protein tolc | SAMN04488090_3807 | Not Available | Negative | 4701046 - 4702371 | 49626.3 |
| lrp/asnc family transcriptional regulator | SAMN04488090_3808 | Not Available | Negative | 4702587 - 4703045 | 17521.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
